rs47810972 SNP Detail

Summary

• ID
  rs47810972
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:79992461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAA ACTTCTATAT CCAGGATCTC
  R
  GTCTTTAAAG AACCTCCGTT GAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61023704	NES16108739	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	A	G		A	G		G
ss322281160	CHEV_7_87487599	CHEVERUD	SCREENING_POP	f	SNP								G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs47810972					SNP	A	G	G	G	A	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61023704	NES16108739	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79992461 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19332	CpG island 19332	170 bp proximal
Hddc3	HD domain containing 3	391 bp upstream
Rr400404	regulatory region 400404	230 bp upstream
Rr649872	regulatory region 649872	1676 bp distal
Rr649873	regulatory region 649873	within coordinates
Rr649874	regulatory region 649874	354 bp proximal
Tssr67435	transcription start site region 67435	378 bp upstream
Tssr67436	transcription start site region 67436	452 bp upstream
Unc45a	unc-45 myosin chaperone A	Intron