rs47811821 SNP Detail

Summary

• ID
  rs47811821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:78066774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGTCATC TAATGTCTAA
  AACAATAGTA ACAAATTCCA TCTAGGACAA GTGGGTAGAT AAGGCAGGAG GATCCTAAGT
  CCTGTCTAGG TTGCAATACA AGTTCAAGAT AATCCTGGGA AACTCAGTGA GATGCTGCTT
  AAAAATAAAG GTAAAAAGAA TATAAGGTGA AAAGGAATTC AGCTCAGTAG AGGAATGATT
  R
  CCCACTATAT CCAAATCTCT AGGTGCAGGT GTGGTACCCA GTACTTACGT ACAAACGTAT
  GTACACACAT GTTCATACAC GCGCGCACTC GCGCGCGCGC GCGCGCGCGC ATACACACAC
  ACACACACAC ACACAGAATC AAGACTCAGG AGTGGTGGTT TAGCCTGTAA CCCTAGTGTA
  GTACTCAAGT GGAGGCAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52382267	NES15267219	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	A	A	A	G		A	A	G	A
ss147176895	ENSMUSSNP4186981	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47811821					SNP	A	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52382267	NES15267219	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:78066774 () rs orientation: forward

Symbol	Name	Function Class
D10Mit139	DNA segment, Chr 10, Massachusetts Institute of Technology 139	1720 bp proximal
D10Mit139.1	DNA segment, Chr 10, Massachusetts Institute of Technology 139.1	1834 bp proximal
Trappc10	trafficking protein particle complex 10	within coordinates