rs47812596 SNP Detail

Summary

• ID
  rs47812596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91052003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGCCCCT CCCACCTGCC
  GGCTCCTCAG TGCTGCACTG GTCCTGCTGC TGCTGCTGGC CACCAACCAC CAGGCTACAG
  GTGGGATTCG GATTCGAGGC TGATGTTTCT GGGGAAGCCT CAGGTGGGCG CAGCCATCCC
  CAGCCCTTCT GACCCAGTGT CTTCTCCTAC AGGGGCTGTT GTGGCCAGTG AACTGCGCTG
  Y
  CAATGCCTGA AGACCCTGCC AAGGGTTGAC TTCAAGAACA TCCAGAGCTT GAGTGTGACG
  CCCCCAGGAC CCCACTGCGC CCAGACAGAA GTCATGTGAG TGTCTCCCTG GATAGCCTCT
  GCCATGGCCA GAGTTGCCCA GACCCTCCTG CCGCCCCATG CTCACCCTAA AGAAACCTCG
  TGCCTTATAA TGATCCCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198266	NES16702726	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47812596					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198266	NES16702726	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91052003 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	940 bp upstream
Rr614420	regulatory region 614420	951 bp distal
Rr614421	regulatory region 614421	1082 bp distal
Rr614422	regulatory region 614422	261 bp distal
Tssr47224	transcription start site region 47224	435 bp downstream
Tssr47225	transcription start site region 47225	333 bp downstream
Tssr47226	transcription start site region 47226	264 bp downstream
Tssr47227	transcription start site region 47227	70 bp downstream
Tssr47228	transcription start site region 47228	7 bp downstream
Tssr47229	transcription start site region 47229	within coordinates
Tssr47230	transcription start site region 47230	20 bp upstream
Tssr47231	transcription start site region 47231	40 bp upstream
Tssr47232	transcription start site region 47232	205 bp upstream
Tssr47233	transcription start site region 47233	222 bp upstream
Tssr47234	transcription start site region 47234	294 bp upstream
Tssr47235	transcription start site region 47235	1044 bp upstream
Tssr47236	transcription start site region 47236	1064 bp upstream
Tssr47237	transcription start site region 47237	1113 bp upstream
Tssr47238	transcription start site region 47238	1119 bp upstream
Tssr47239	transcription start site region 47239	1179 bp upstream
Tssr47240	transcription start site region 47240	1191 bp upstream
Tssr47241	transcription start site region 47241	1206 bp upstream
Tssr47242	transcription start site region 47242	1243 bp upstream
Tssr47243	transcription start site region 47243	1266 bp upstream
Tssr47244	transcription start site region 47244	1300 bp upstream
Tssr47245	transcription start site region 47245	1320 bp upstream
Tssr47246	transcription start site region 47246	1371 bp upstream
Tssr47247	transcription start site region 47247	1415 bp upstream
Tssr47248	transcription start site region 47248	1478 bp upstream
Tssr47249	transcription start site region 47249	1548 bp upstream
Tssr47250	transcription start site region 47250	1686 bp upstream
Tssr47251	transcription start site region 47251	1750 bp upstream
Tssr47252	transcription start site region 47252	1802 bp upstream
Tssr51810	transcription start site region 51810	1001 bp upstream
Tssr51811	transcription start site region 51811	947 bp upstream
Tssr51812	transcription start site region 51812	57 bp downstream
Tssr51813	transcription start site region 51813	89 bp downstream
Tssr51814	transcription start site region 51814	1063 bp downstream
Tssr51815	transcription start site region 51815	1097 bp downstream
Tssr51816	transcription start site region 51816	1131 bp downstream