rs47813519 SNP Detail

Summary

• ID
  rs47813519
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:72852521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGGGGAAGA GGAGGCAGGA TTTGGCTCTC CACTCCCCAT
  CTCGATGCAC CCCTGCAATC CTTAGCCCAT TTTATCCCAG AGCCTTACTG GATGCCCGCA
  Y
  CTGCTGTGCG ATCTGCGGAC ACCCTGCAAG TGCAGACGCT TGAGGCCCTC TAGCCAGCGA
  CTCCGAGGCC CAACCTATCA GGGGGTTCCG ATGTCTCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132417981	ENSMUSSNP146966	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47813519					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:72852521 () rs orientation: forward

Symbol	Name	Function Class
Atp2a3	ATPase, Ca++ transporting, ubiquitous	within coordinates
Cpgi3227	CpG island 3227	within coordinates
Rr402707	regulatory region 402707	1993 bp upstream
Rr450779	regulatory region 450779	1241 bp distal
Rr450780	regulatory region 450780	516 bp distal
Rr450781	regulatory region 450781	within coordinates
Rr450782	regulatory region 450782	960 bp proximal
Tssr102861	transcription start site region 102861	1400 bp downstream
Tssr102862	transcription start site region 102862	516 bp downstream
Tssr102863	transcription start site region 102863	467 bp downstream