rs47813870 SNP Detail

Summary

• ID
  rs47813870
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46870197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGTATCACC TTTTCAACTC TCAGGCTTTG
  GGGATTGTGC AGCTGTTGCT TGTCACTTAG ATAGGACCAC TGTGGGCCTG AGTCAAAGCA
  TCTGGGATCC CTACATGAGG CCCTTGTGAG GTCAAATAAC TGAAGATTTC GGGGTAAAAT
  R
  CTGGACCCCA ACAATCCCAA CAGGCTCTTG GCCTCCCATA TCCAATCTGC CAATAAACAA
  AACAAGCGAT GATGAAAATC AGGGAGGCGG CTTGTTGAAC ATGGCCACTC TGGGGAAATA
  AACACGTAAG GGTCAGATGA ACACGGATTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61389690	NES16770388	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G		G	G	G	G		G
ss322945450	CHEV_9_46766982	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47813870					SNP	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61389690	NES16770388	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46870197 () rs orientation: forward

Symbol	Name	Function Class
Gm39331	predicted gene, 39331	1677 bp downstream
Gm47153	predicted gene, 47153	1336 bp downstream