rs47814281 SNP Detail

Summary

• ID
  rs47814281
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80726177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCCCAAG CTGAGAGAGT
  GCCTTTGTTT TCCAGGGGGA CTCCGGGGGA CCCCTGGTCT GCGAGGAGCC TTCAGGAAGG
  TTCTTCCTGG CTGGTATCGT GAGCTGGGGA ATCGGCTGCG CAGAAGCGCG GCGCCCAGGG
  GTCTACACCC GAGTCACCAG GCTGCGGGAT TGGATCTTGG AGGTGACCAG CGCTGCTGAC
  R
  TGCCTGTGGT CCCCACCGCG ACTCCAGCGC CCGCCACCCC CAGCACTCCC TGGCCTACCA
  GCCCTGAGAG CTGGGCGCCC AACACCTTTG CCAAACCCAC CGCTGCCCCC AGCCCTGTGC
  CACTGCACCC CAGCACTACG GCCAAGCCAC AAGGTATTGC GGATTTTGGG CAGGTGTCCC
  CTCCCGGACG GGTCAGATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61290360	NES16912737	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47814281					SNP	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61290360	NES16912737	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80726177 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1917	CpG island 1917	1761 bp distal
Cpgi1918	CpG island 1918	within coordinates
Tmprss9	transmembrane protease, serine 9	within coordinates