rs47814526 SNP Detail

Summary

• ID
  rs47814526
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:80699544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGCACCC TTTGTGCGGA
  AGCTGCCCTT CTGCACGTGC AGGTGAGGCC CAGGCCTAAC CAGGCCCCCT CCTTCCTCCT
  CCTGCAGTCT CCTACCCTCC TGGCGTATTC AGAGATCCAG GAGGTGCTTA CTAAGTGCTG
  GTCATGGGTT GGGTAGGCTT TGGGGCTCTA GTTGCCTGTG CACTGTATAC CCCTTCCTGT
  Y
  TAACTGAGCC ACAGGGTATG ACACGGGGGT CCCAGAGAGT GAGGCCAAGG ATGGTAGGCT
  GGGAAGGGAG TGGCAACATC ATAGGCCTCC AAAGCTCTAC CTGCCCCTGG ATGGCACTGC
  TTCAGAGCCA CCTGTGGCTA GGTGAGGCCA GCAGCCACAG GGTGGAGGCC TTTAGGGTTG
  CTATCCTAGA GCCAGAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61290438	NES16901255	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs47814526					SNP	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61290438	NES16901255	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80699544 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr435425	regulatory region 435425			1551 bp distal
Sppl2b	signal peptide peptidase like 2B			Intron
				Noncoding-Transcript-Variant