rs47815674 SNP Detail

Summary

• ID
  rs47815674
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32877897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAGTCCC AAGTTAATGA
  TTTTTAAAAA CACAATATAT CTTGTCTTTG GAAGGGCAGG AGGGGCAATA AAGGTGGGGT
  TCAATGTCGC CTTTGGCCAT ACCAGTCTTA TCTCCTCCCT CATGTGGGAG GAGTTAAGTC
  CTGAGGATCT CTTTTCCATG CTCAGTGTGA CCCTGACTTG GTTTCACTGT GCAGCTGGCT
  K
  ACTAAACCTC CTTTCTTGGC CTCATGCCCA GGCCAGGAGG AAACTGTCAG ATCTGGGAAG
  GTTTGGCTGG CACACATGAG CCCAGCCTTC CATTGCTTCC TTTAGGCACT TATCCAAAGA
  GGCCCCAGAA GAAAGAGATT GAGGTGCTGC AGAAGAATCG CCACTCCTGA GAGAAGGTGC
  CAAGCTAGGG AAAGTGGAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss62679599	NES17313153	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T		G	G	T		T
ss325362711	CHEV_17_32795868	CHEVERUD	SCREENING_POP	f	SNP											G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs47815674					SNP	T	T	T	T	T	T	G	T	T	T	G	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62679599	NES17313153	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32877897 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f40	cytochrome P450, family 4, subfamily f, polypeptide 40	within coordinates
Gm65897	predicted gene, 65897	242 bp upstream
Rr525786	regulatory region 525786	253 bp distal
Rr525787	regulatory region 525787	13 bp distal
Rr525788	regulatory region 525788	within coordinates
Tssr143725	transcription start site region 143725	10 bp downstream
Tssr143726	transcription start site region 143726	43 bp upstream
Tssr143727	transcription start site region 143727	66 bp upstream
Tssr143728	transcription start site region 143728	86 bp upstream
Tssr143729	transcription start site region 143729	98 bp upstream
Tssr143730	transcription start site region 143730	121 bp upstream
Tssr143731	transcription start site region 143731	143 bp upstream
Tssr143732	transcription start site region 143732	157 bp upstream