rs47815875 SNP Detail

Summary

• ID
  rs47815875
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127484862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGATTTTC TCATTGTTGG
  TTTTTGTGTT ATTTTGCCAC ACTGGGTCTA GATTTGTCTC GCTTCTAGAT CTACTTGATC
  CTTCTGTAAA TCCTCTCATT CTTGCGTGTA TGTGTTTTTT TATTTTTAAA TGCTCTTTTA
  GTTTTCAGAC TTCTCCTTCA CATTTGCATC TCCCTTCTTA ATTCTCAGGA TGTTCTTTAC
  R
  TTTAGTGCTC AGCTGTGTCA TTCCCTCCTG CTGTTGGAGC TGTTGCAGGA ACACAGGAAA
  TGAGGTCAGG GTTGGAGCAC CTAGGGAGTC TGCATCTTCC GTTCCAGGCT GTTACCAGTT
  ACACAGCAAG GGGCACAGTA GGGACATAAT GTCAGCTGGT CCCTGGGGGC ACAGCAAGCA
  CATGATGTCA GCTGGTCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320956116	CHEV_3_127394131	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47815875					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127484862 () rs orientation: forward

Symbol	Name	Function Class
Alpk1	alpha-kinase 1	within coordinates
Gm16238	predicted gene 16238	722 bp downstream
Tssr35587	transcription start site region 35587	430 bp upstream
Tssr35588	transcription start site region 35588	78 bp downstream
Tssr35589	transcription start site region 35589	1333 bp downstream