rs47816629 SNP Detail

Summary

• ID
  rs47816629
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147826307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTATCTTT TTAAAACTCT
  TACAGTGGGC AATTTCATGA GGTCATACAT GTGAAAACAT GGAAATGCCA GTATTTGACT
  GTTTTCAATC TATGGAAACA TTACATTCAA GTGGCTCAGC CAAATATTTA GGTAACCTAA
  TTTATGAACT CCTGACAATG TCTGAATTAC AAATTTTGAC AATAAATATT TTATATATTT
  R
  AGAAAAAAAG AAGGAAAGTC AGAGCAAATC CCAATTTAAG AAATCACTAC TAACCAAGAA
  AGAATAAAGT GAAGAAAAAA AAAAGAGTTA CAAGGTTTGA AAACTTTTCT CCCAAAGAAG
  ATGATGAAGA GCTTGGCTTT CACACGTGCT AACGGCAAAG AGAGACAGGC AGACATCAGT
  CCTGGTCCCC TTTCAAAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147908188	ENSMUSSNP1245099	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47816629					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147826307 () rs orientation: forward

Symbol	Name	Function Class
9030622O22Rik	RIKEN cDNA 9030622O22 gene	within coordinates
Rr374033	regulatory region 374033	within coordinates
Rr566833	regulatory region 566833	162 bp proximal
Rr566834	regulatory region 566834	1064 bp proximal