rs47816758 SNP Detail

Summary

• ID
  rs47816758
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:27952381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTCGCTG GCTTCTATGT
  ATCTGCCGGC TCTGAAGTTT CACCAGGTGG ACGCTGGGGA GCGGGCTCCC AGGTTTAAGC
  CTCTGCCTCC CACAAGGCTT TACAACTTTT CTGGTTAACC CACCCAGCCC AGCAAGGTTG
  GAGGGCGCAT CCGCTGCTGC CTTGGTTCCC AGTGTTTGTG GAAACACAGA GTGGCCAGAG
  K
  GTGACGGGAA ACGCGACAGC CGCGCTCCTG GCTGAACCAG CAGGATGGGA AGACAGAACT
  TACTTTGTAC TTGATAGTTT CATTGTTGAG ACTGCTCGAT TTCCTGGAAA TACACTCACC
  ATGATGTTTT CCGGAGCAAA TCGTCCCTTA GCTTTTCTTT CCCCCTCCCC TTTAGGAGTT
  AGACCTCGGA GTCTGGAGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52210474	NES15216096	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47816758					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52210474	NES15216096	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:27952381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1406	CpG island 1406	809 bp distal
Cpgi1407	CpG island 1407	within coordinates
Ptprk	protein tyrosine phosphatase receptor type K	within coordinates
Tssr92814	transcription start site region 92814	1512 bp downstream
Tssr92815	transcription start site region 92815	1458 bp downstream
Tssr92816	transcription start site region 92816	1448 bp downstream