rs47817255 SNP Detail

Summary

• ID
  rs47817255
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:74855235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTTAAAA TAAAAGGGAA
  GGTTGGAGGA GGAACCTGTG TGTGCACAGG GGAGGGACCT GCACTTCACC TTGGGAGAAG
  GAGGCAGGTA CTCGAAGCCT GCTGCGAGGA TTGCGGTTAG ATCTGGTTCT ACTTAACTTC
  TAAATTGCCG GTCTCAAAGA GGGAGCAGGA GACTCATTAA TGAAACCTGC GAATGACATT
  Y
  ACCTGCAAAG TGTTCCAAAC ACCAGAAAGA ACAGAAAAAT ATAAAGGGTC TCTGCAGAGG
  TCAGAATCTG CCAGGAAATG ACAGAGCTGA ACCAGGAGAG ACGGCAGAAC ACATCTGGAG
  TCAATAACCA GGAACACAGA CATTCAGAAA GTGGGAAAGA CAAGGGAAGT GGTTGAGCGA
  GCAGAGTCCC TTGTGGCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61183431	NES16691603	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47817255					SNP	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61183431	NES16691603	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74855235 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lnx1	ligand of numb-protein X 1			Intron
				Noncoding-Transcript-Variant
Rr613329	regulatory region 613329			1833 bp distal
Rr613330	regulatory region 613330			within coordinates