rs47819063 SNP Detail

Summary

• ID
  rs47819063
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83172851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGCTGCG GAAGAAGGAG
  AAGTGAGCAT CATCCTGGGG CCCTGAGTCC TCTCCCCTTC CCTCCTCCCC TGCAGTGAGC
  ACCGTCCTGG ATCCTGAGTC TCCTCCTCTC CCCTCCTCCT CTGCAGCTGT CTGTTGCGAG
  TGACTCCTTT TGCCTGCCTT GGAGTGTGGC TATCCACTCT TTCTTTCCTA CCCTTCTCTG
  Y
  TCCTCCTGTG TCTCAGGTTG CCTCTGAGGC CTGCCCTCAG GACGTGCCTG AACCCATGCT
  CTCTTCCACA GAGACTTTGA GGAGACAATG GACGCACTCC AGGCTGACAT CGACCAGCTG
  GAGGCAGAGA AGGCAGAGCT CAAGCAGCGC CTGAACAGCC AGTCCAAGCG CACAATCGAG
  GGGCTCCGGG GCCCCCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60903735	NES15949686	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47819063					SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60903735	NES15949686	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83172851 () rs orientation: forward

Symbol	Name	Function Class
Dctn1	dynactin 1	within coordinates
Tssr57329	transcription start site region 57329	44 bp downstream
Tssr57330	transcription start site region 57330	20 bp downstream
Tssr57331	transcription start site region 57331	7 bp upstream
Tssr57332	transcription start site region 57332	54 bp upstream
Tssr57333	transcription start site region 57333	91 bp upstream
Tssr57334	transcription start site region 57334	130 bp upstream
Tssr57335	transcription start site region 57335	156 bp upstream