rs47820150 SNP Detail

Summary

• ID
  rs47820150
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:75852324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTATATACAT ATATACATAT ACATACCTAC ATACATATGT
  GTGTGTGCGT ATTATATAAA GCATTGGAAA AGCCCAGTAA CTTCTCCCTG TGCTGAGAAC
  W
  GAATCTGCCC TCTGCTGCTG AAATTACACT ACCCAACTTT CCCTAAGCCT GCCTGCCTTG
  CTGGCTGTTG GTGGAAGAAC ATCGAATTCC AGCAGCCAAG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63567332	NES16970672	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47820150					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63567332	NES16970672	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:75852324 () rs orientation: forward

Symbol	Name	Function Class
Ccdc166	coiled-coil domain containing 166	within coordinates
Cpgi7203	CpG island 7203	445 bp proximal
Tssr131698	transcription start site region 131698	1563 bp upstream
Tssr134891	transcription start site region 134891	1348 bp downstream
Tssr134892	transcription start site region 134892	1469 bp downstream