rs47821106 SNP Detail

Summary

• ID
  rs47821106
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:83718094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTAAAAAAG CAAACAAAAA CCTAAAAAAA AAAAAAAAAA
  AACCGTTGAG AGCCTCCGAG TTGAAGGTGA GCAGTGTTAA CCACCTTGTG TGGCCTAATG
  C
  AGTTGTTTCT GTTTTTCTCA GTAAGTGATG GTTATCCGTT AAATTGTACT TCATACTTTA
  ACTTCTTTTG TTTGGAAACA TTACAAGTGT TTTTTGCTG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136709581	ENSMUSSNP5738207	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss323046438	CHEV_9_83729648	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47821106					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:83718094 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22096	CpG island 22096	996 bp distal
Gm57060	predicted gene, 57060	1443 bp upstream
Rr383689	regulatory region 383689	686 bp downstream
Rr683950	regulatory region 683950	1454 bp distal
Rr683951	regulatory region 683951	1313 bp distal
Rr683952	regulatory region 683952	420 bp distal
Tssr86358	transcription start site region 86358	1373 bp downstream
Tssr86359	transcription start site region 86359	1305 bp downstream
Tssr90761	transcription start site region 90761	1475 bp upstream
Ttk	Ttk protein kinase	within coordinates