rs47821498 SNP Detail

Summary

• ID
  rs47821498
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:107455647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAGAGGTT TATGGAGAAG AATAAGAACA CCTTTGTCTC
  ATGACTTTGG AAAAGATGAG CAAATTGGTT CCTTCAGCAG AATCTAGATA TAAATGTATT
  C
  AGATATCTAG ATATCACTGG ATAACTAGTA TCAAGATAGC AAAATAAGCA GCATAAACTA
  CCAGAACAAG CCTCTCCCTA AACAGGGATG CATCCCTAG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145102793	ENSMUSSNP3884146	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs47821498					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:107455647 () rs orientation: forward

Symbol	Name	Function Class
Gm70772	predicted gene, 70772	1105 bp upstream
Rr416649	regulatory region 416649	1544 bp proximal
Serpinb10	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10	1110 bp upstream
Tssr8339	transcription start site region 8339	1086 bp upstream
Tssr8340	transcription start site region 8340	1101 bp upstream