rs47821608 SNP Detail

Summary

• ID
  rs47821608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24550035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAG CAAAAGGCCC TGCCTCCTCC
  Y
  CAGCCGCTCT TCCTCCCTGG AGCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148091801	ENSMUSSNP5674865	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47821608					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24550035 () rs orientation: forward

Symbol	Name	Function Class
Gm71601	predicted gene, 71601	450 bp upstream
Kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	within coordinates
Tssr50307	transcription start site region 50307	493 bp upstream
Tssr50308	transcription start site region 50308	470 bp upstream
Tssr50309	transcription start site region 50309	451 bp upstream