rs47822243 SNP Detail

Summary

• ID
  rs47822243
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:154495621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATCATTTC TAACAAGATC ATCGTCATAA TAGCAATACA
  TAAAACTCAC AAAGGTGAAC ATCTTAGGGA TAAATGCATT ATATGCATTT CACAAAATGG
  R
  CCCATCGTGT AGATATTTGT TTAATATCAC TTTAAAAAAT GGAGGTTGTT TATGGGAAGA
  TGAAAACTAG AAGCAGGGGT GACAGAAAAA AAACACTGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145765818	ENSMUSSNP6363061	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47822243					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154495621 () rs orientation: forward

Symbol	Name	Function Class
Cacna1e	calcium channel, voltage-dependent, R type, alpha 1E subunit	Intron
Rr420845	regulatory region 420845	1843 bp distal
Rr420846	regulatory region 420846	872 bp distal