rs47823719 SNP Detail

Summary

• ID
  rs47823719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60959540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGCTGTT ACTCAAGATG
  AGGGCTCCAC CTCAGCAATA ATCTTATCAT CTTCTACAGC CCTCAAAGTT TATACACCAG
  TTGCTCCCTT ACAACAGTGT GGACTTTGAT ACAAAGTTGA TCTGCTTATT TTGTAAAATA
  AGAGGACTAA TCTAGATGAA TTCCCAGTGA GCCATCACCT TTATCTCACT GCTGGTATTC
  Y
  CAGCAGTTCC TCTCTGTAAC CAGTCCTCAA AATGAGTGCC ATTTTTTTCT CTACTCTCTT
  TGAATTTCCC CCTTCTCTAT TCTCTAAACA CAGTAGTTCG GTATGGACCC AGACTTTGAC
  TATTTTAGGT GCTATGAACT AATTCTGTTA CAGCTACTCA CCTCTGGTGC TGTGGCAGTG
  TACTGTGTGC TAAGGTTCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss52343507	NES15282558	PERLEGEN	MM_PANEL2	f	SNP	C	T	C		C	T		T
ss323327707	CHEV_10_60586509	CHEVERUD	SCREENING_POP	f	SNP				T			C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs47823719					SNP	C	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52343507	NES15282558	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60959540 () rs orientation: forward

Symbol	Name	Function Class
Gm55864	predicted gene, 55864	1376 bp downstream
Rr228136	regulatory region 228136	1340 bp distal
Rr401931	regulatory region 401931	1626 bp downstream
Sgpl1	sphingosine phosphate lyase 1	within coordinates