rs47823777 SNP Detail

Summary

• ID
  rs47823777
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:103252637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGGCCT TAAACTTAAC
  TATGCAGTGT GTAGCTAAGG ATGACCTTGA ACTGATCCTC GTGCCCCATC TCCAGAATTC
  TGGGATTATG AGCATGTGCC ACCATACCTA GTTCCCTTCC TTTGTCCTTT AATGACCTAG
  ATGTTTCTGG GGTAGGGGAA ACAACACTCC TGATTTCTAG TGTGCATAGG CCCATGAGAG
  R
  CAGACAGTTT CTTTTTGCCC TACTTTCTGG GTCTAGGATG TGTTTGGAGA GTAGGATGGA
  AGGACAGACT GCAACTTTGG TCAGTGGGGG CAGTGGGTGG GGTTTATTGC ACTTGCAACA
  GAGTTTAAAT AAGTTGGGGT GGGTTCTGGA GGAGAGGGGA GGGTTGGCTA GGGAGAGAGG
  GGCAGCGTCA GTGCAGCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52584132	NES15645634	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47823777					SNP	A	A	G	A	G	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52584132	NES15645634	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:103252637 () rs orientation: forward

Symbol	Name	Function Class
Itga5	integrin alpha 5 (fibronectin receptor alpha)	76 bp downstream
Rr404654	regulatory region 404654	1441 bp downstream
Rr510620	regulatory region 510620	1176 bp distal
Rr510621	regulatory region 510621	1588 bp distal
Rr510622	regulatory region 510622	601 bp distal
Tssr136772	transcription start site region 136772	348 bp downstream
Tssr136773	transcription start site region 136773	428 bp downstream
Tssr136774	transcription start site region 136774	502 bp downstream
Tssr136775	transcription start site region 136775	520 bp downstream
Tssr136776	transcription start site region 136776	564 bp downstream
Tssr136777	transcription start site region 136777	596 bp downstream