rs47824163 SNP Detail

Summary

• ID
  rs47824163
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148529602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAG TTTGAAGCCA ACTCAAGCTT
  C
  GTGAGATTAT CTTTTTGTTT GGTTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148007740	ENSMUSSNP6857996	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47824163					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148529602 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15303	CpG island 15303	139 bp distal
Gm23303	predicted gene, 23303	1660 bp upstream
Gm69484	predicted gene, 69484	1787 bp downstream
Tssr44605	transcription start site region 44605	646 bp upstream
Tssr44606	transcription start site region 44606	406 bp upstream
Tssr44607	transcription start site region 44607	362 bp upstream
Ubiad1	UbiA prenyltransferase domain containing 1	385 bp upstream