rs47824623 SNP Detail

Summary

• ID
  rs47824623
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82602490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCTCAGC CTTCCCGAAT
  CCTGCCCTCG GCTTCTTAAT ATAACTGCCT TAAACTTTTA ATTCTACTTG CACCGATTAG
  CTAGTTAGAG CAGACCCTCT CTTAATCCCG TGGAGCCGTG ATCGCGGTGG GGCCAGGCCC
  ACGGCACCCC GACTGGTTAA AACTATTCGT CCCTTTTCGT TTGAAGATTG AGTTTTCTCG
  K
  GGTCTTCTCA GCCCTGACTT GTTCCCCGTG CACCTTGTTC GACTCCGGAG GTTCAGGTGC
  ACGGACACCC TTCCAAGTTC ACCCCTACTC CATCCTCAGA CTTTTCACGG TGAGGCACAC
  CCCTCCAGCT TCCGTGGGCA CTGCGGATAG ACAGGCACAC CGCCAAGGAG CCAGAGAGCA
  TGGCGCAGGG GACTGTGTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401436739	MGP_WTSI_18_82753757	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs47824623					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401436739	MGP_WTSI_18_82753757	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82602490 () rs orientation: forward

Symbol	Name	Function Class
Gm58829	predicted gene, 58829	257 bp downstream
Mbp	myelin basic protein	within coordinates
Rr541827	regulatory region 541827	230 bp distal
Tssr152152	transcription start site region 152152	240 bp downstream
Tssr152153	transcription start site region 152153	116 bp downstream
Tssr152154	transcription start site region 152154	93 bp downstream
Tssr152155	transcription start site region 152155	57 bp downstream
Tssr152156	transcription start site region 152156	within coordinates
Tssr152157	transcription start site region 152157	47 bp upstream
Tssr152158	transcription start site region 152158	104 bp upstream
Tssr152159	transcription start site region 152159	134 bp upstream
Tssr152160	transcription start site region 152160	184 bp upstream
Tssr152161	transcription start site region 152161	201 bp upstream
Tssr152162	transcription start site region 152162	217 bp upstream
Tssr152163	transcription start site region 152163	242 bp upstream
Tssr152164	transcription start site region 152164	282 bp upstream
Tssr152165	transcription start site region 152165	335 bp upstream
Tssr152166	transcription start site region 152166	401 bp upstream
Tssr152167	transcription start site region 152167	416 bp upstream
Tssr152168	transcription start site region 152168	451 bp upstream
Tssr152169	transcription start site region 152169	512 bp upstream
Tssr152170	transcription start site region 152170	593 bp upstream
Tssr152171	transcription start site region 152171	653 bp upstream
Tssr152172	transcription start site region 152172	760 bp upstream
Tssr152173	transcription start site region 152173	783 bp upstream
Tssr152174	transcription start site region 152174	801 bp upstream
Tssr152175	transcription start site region 152175	824 bp upstream
Tssr152176	transcription start site region 152176	1033 bp upstream
Tssr152177	transcription start site region 152177	1201 bp upstream
Tssr154083	transcription start site region 154083	135 bp upstream
Tssr154084	transcription start site region 154084	81 bp upstream
Tssr154085	transcription start site region 154085	148 bp downstream
Tssr154086	transcription start site region 154086	703 bp downstream
Tssr154087	transcription start site region 154087	918 bp downstream
Tssr154088	transcription start site region 154088	958 bp downstream
Tssr154089	transcription start site region 154089	1069 bp downstream
Tssr154090	transcription start site region 154090	1141 bp downstream