rs47825434 SNP Detail

Summary

• ID
  rs47825434
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90294027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTA CCAGGTTGTC CCTCCCCTCC
  K
  CTCTGTGTGT CTCTCACAGT TCTGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148531518	ENSMUSSNP1679102	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	T
ss325275157	CHEV_16_90497384	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47825434					SNP	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90294027 () rs orientation: forward

Symbol	Name	Function Class
Hunk	hormonally upregulated Neu-associated kinase	within coordinates
Rr519144	regulatory region 519144	657 bp proximal
Tssr139293	transcription start site region 139293	29 bp upstream
Tssr139294	transcription start site region 139294	65 bp upstream
Tssr139295	transcription start site region 139295	1358 bp upstream