rs47825465 SNP Detail

Summary

• ID
  rs47825465
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82769326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCCCTGA AAAGTAATAA
  CTTCAAGAAA TGGCTAATGG TCAAATACAT GAACCTGCAA CTGAGAATGG AGACATTTCT
  GAACACACAG AGTAATGGGA GAAAGCTGCA AGTTGGGACT ACAAAGACAG AGGTATCTAC
  ACATGACCCA TACAAAATAA GGGATATGGC AAGAGCTGCA TTTGAAAGAC TTTATGGCAT
  W
  AGACACTAGG GAAGAAGTTA TTTCTAGTTA AGGCTAGAAA AGCAACTTAA GGCAGGTCTT
  CCTCCGTACC CACTAACTCA CTTCCTTCGA CTACATCTGC AATAGCTATA AACTGCCCCT
  GTGAGGGTTC CTCAGCATCT CTGCAAGGTA CCTTCAACTC CCACACTTTT AAACAGAGGT
  CTAGAAGAAA AAAAAATCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63573917	NES17026907	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47825465					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63573917	NES17026907	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82769326 () rs orientation: forward

Symbol	Name	Function Class
Tcf20	transcription factor 20	within coordinates
Tssr135590	transcription start site region 135590	737 bp upstream
Tssr135591	transcription start site region 135591	1578 bp downstream