rs47825489 SNP Detail

Summary

• ID
  rs47825489
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123301098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTCAGC ACCTGTCACA
  ACACACCCCC TAGCTGGTGT TACATACTTG GCTTCTGGAG ATTTGAAGTT GAATGGCACA
  CACTAGAAGG CTTGGAGAGC AGCAAGCAAA AGATACTTTT CATTAAGGGC AACCGTCTGT
  GGCTTATTAA TCACTCATGT TCCAAGCCAA CATTTATCTT GCACCTTTGT AACAATCAAA
  M
  CTATCTTCTT TGGAAGCCTA GTTAACCCAG TTATTTCCTG CGCAAATGTC TCCTGTATCG
  TTAACTCTTA ATTCACACAA CCTCCAGAAA CAGGACACAG TCTTATTACA CACCAAACAT
  CTTTTATTTA ATATAAAATA TTCAATTTTC AAAAATTAAA AGCGAAGATT CCCTGTAAGT
  TGACCAGAGA CGATCTCAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60445533	NES15941776	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47825489					SNP	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445533	NES15941776	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123301098 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	489 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	852 bp downstream
Rr397991	regulatory region 397991	415 bp downstream
Rr584523	regulatory region 584523	530 bp distal
Rr584524	regulatory region 584524	395 bp distal
Rr584525	regulatory region 584525	925 bp proximal
Rr584526	regulatory region 584526	1470 bp proximal
Rr584527	regulatory region 584527	1861 bp proximal
Snhg8	small nucleolar RNA host gene 8	103 bp downstream
Snora24	small nucleolar RNA, H/ACA box 24	488 bp downstream
Tssr31551	transcription start site region 31551	1101 bp upstream
Tssr31552	transcription start site region 31552	1139 bp upstream
Tssr35502	transcription start site region 35502	881 bp downstream
Tssr35503	transcription start site region 35503	1466 bp downstream