rs47826091 SNP Detail

Summary

• ID
  rs47826091
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48265775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAAAACCT AGCTTTTATA
  GGTTTAGAAA ACTCATTATA CATTCTCAAA ACCCTGAACA CTTGCTAATT AGAAAGTCTT
  GAGATTCAAC GAGCACACAG TACCAGCTGT TACATGAAGG ACCTGATGAG AGATTAACAC
  AGTTGTAGCA TCAATGGGTT GAATCTCCAG CCATGAGTCA AGAGGGAAAG TGCATCTATA
  Y
  CATGAATGTG GATGGTTGCC AAAATCACAT GAAAAGGGGG CACCTGGATT TGAACCAGGG
  ACCTCTTGAT CTGCAGCCAA ATACTCTACC CCTGAGCTAT ACCCCCACTA GTAACAGTAT
  ACACAGTTAA TAATCATCAT CTGAGTGGTG ATAAATTATG AGTGACTACA AAGTTAAATT
  AGAGATGCTC ACAGATTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60884042	NES16035354	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47826091					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60884042	NES16035354	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48265775 () rs orientation: forward

Symbol	Name	Function Class
Gm22122	predicted gene, 22122	387 bp upstream
Gm30362	predicted gene, 30362	within coordinates
n-TCgca12	nuclear encoded tRNA cysteine 12 (anticodon GCA)	35 bp downstream
Tssr56117	transcription start site region 56117	375 bp upstream