rs47826640 SNP Detail

Summary

• ID
  rs47826640
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43920833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTTACAG ACAGTTGTGA
  GCTGAGAATT AAGTCCAGTT CATCTGCAAG AACAGCAAGT GCTCTTAAAC ACAGAGCCAT
  CTCTCCAGCC CCAGACGTAA AAGAAAATAC TCTTAGTGCT GTTATTTACA CAGTTCTTAT
  AGTGGAAGTT AATATATAGC TAAAGTATTG CCTACTTTCA TCTGAACATC AATACATACA
  K
  TATTGAGGCA CAACAGTTCA TCCGTAGGCC ATGTAAAGTC TTTAAAGAAA AGGCGAGAGC
  ATGTATACGT TTACCTGTTG GAACAATATA TGAGTTTATA AATTCCACAA CGCTATGAAT
  GGATGCCCTG AATAATAATC ATGTGCTTGT ATCCTTTCAT GGGGCTAGAG AGCAGTTGTT
  CCTCTTGCAG AGGACTGGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss62746856	NES17342898	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs47826640					SNP	G	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62746856	NES17342898	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43920833 () rs orientation: forward

Symbol	Name	Function Class
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	within coordinates
Tssr144713	transcription start site region 144713	1322 bp upstream
Tssr144714	transcription start site region 144714	1399 bp upstream
Tssr144715	transcription start site region 144715	1935 bp upstream