rs47828282 SNP Detail

Summary

• ID
  rs47828282
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34973575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGC CTCTCTGGTG TGTCTGAAGA
  C
  AGCAACAGTG TACTCACATA CATGA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322156830	CHEV_7_36059169	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47828282					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34973575 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18867	CpG island 18867	787 bp proximal
Cpgi18868	CpG island 18868	1366 bp proximal
Gm73037	predicted gene, 73037	within coordinates
Rr645353	regulatory region 645353	908 bp distal
Tssr72028	transcription start site region 72028	1380 bp downstream
Tssr72029	transcription start site region 72029	1396 bp downstream
Wdr88	WD repeat domain 88	within coordinates