rs47829240 SNP Detail

Summary

• ID
  rs47829240
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104695290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGTTGTC TGCCTGGATT
  TGAGACAGCT TCACTCCACA GCCTATGTTG GCCTGGAATT TGTGGTAACT CTGCCCCCTC
  GGGAGTGCTG AGATGACAGG CATGAACCAC CCGGCCAGCT GCACCTGCAG TAGACTCCAT
  ATGACATACA TTTATTCTGG GAAATACTTG TTGAAACCTA TGACGAGCAG AGTTTGGTTG
  R
  ATGGTACAGA GGGCAGGTAG GAGGGGGAGC ATGGCAGGCA GCAGGCAGCC AGCACCTGCC
  TGGGTGCCTC ACAGGCCTGC TTGTAAATTT GACTGATTTA GTTTTTGTAG CCCAGGATGG
  CCTGGAATTA ACTCATAGAG ATCCATCTGC CTTTGCTTCT TGTGTGTCAT CGTGGCTCAC
  CTCACTGGAA ATTCCTGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135571335	ENSMUSSNP3842640	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47829240					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104695290 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13651	CpG island 13651	570 bp proximal
Gm66976	predicted gene, 66976	335 bp downstream
Ppm1j	protein phosphatase 1J	1956 bp downstream
Rhoc	ras homolog family member C	1060 bp upstream
Rr77009	regulatory region 77009	310 bp proximal
Tssr31056	transcription start site region 31056	598 bp upstream
Tssr31057	transcription start site region 31057	819 bp upstream
Tssr31058	transcription start site region 31058	868 bp upstream
Tssr31059	transcription start site region 31059	1052 bp upstream