rs47829265 SNP Detail

Summary

• ID
  rs47829265
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4090567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TGTCCAGGCA GCCAGGGGCC AGGACTTGGT GGATCAGCAG
  CAGGTCCAGC AAGTTGTAAT CGGCAAAGGA GATCTGCAGG GGCAGGAGGT GTGGGTCTCA
  R
  CAGCTGGGAG GAGGCTGGGG CTGGGGGGCA GAGAGCTGAG GGCCCTCACC CCCACCTCCA
  CCCCTTAGCT CTGCTCCACT TTACATATGG CTCCCTCTTG T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146004425	ENSMUSSNP4266818	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47829265					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4090567 () rs orientation: forward

Symbol	Name	Function Class
Gstp2	glutathione S-transferase, pi 2	within coordinates
Rr357950	regulatory region 357950	1367 bp distal
Rr363267	regulatory region 363267	1966 bp distal
Rr363269	regulatory region 363269	633 bp proximal
Tssr157438	transcription start site region 157438	1663 bp downstream
Tssr157439	transcription start site region 157439	1676 bp downstream