rs47830010 SNP Detail

Summary

• ID
  rs47830010
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30254381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCAGGACAC CTCTCTAGGG ACGCTACTGT CACCCCTCAG
  TCAAGGCTCC CATCAAATTG ACCCCACTTT GGGCTTCTAT CACCACGCAG GCCTCCTACC
  R
  CACTTGTAAC CTGTGTAGAA TACCCCAAGG TGACACCAGA GTACAGTGTA GTCACCTAAT
  TCTCCACATG GAGAAACTGC ATGGGCTTTC CACATCAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60990784	NES16136667	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	A	G	G		A	G	A	G		G
ss322135229	CHEV_7_31339975	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47830010					SNP	G	G	G	G	G	A	A	G	G	G	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990784	NES16136667	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30254381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18809	CpG island 18809	1422 bp distal
Cpgi18810	CpG island 18810	359 bp distal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	485 bp downstream
Tssr65780	transcription start site region 65780	1684 bp downstream
Tssr65781	transcription start site region 65781	1647 bp downstream
Tssr65782	transcription start site region 65782	162 bp downstream
Tssr65783	transcription start site region 65783	96 bp downstream
Tssr65784	transcription start site region 65784	72 bp downstream
Tssr65785	transcription start site region 65785	17 bp downstream
Tssr65786	transcription start site region 65786	4 bp downstream
Tssr65787	transcription start site region 65787	79 bp upstream
Tssr71789	transcription start site region 71789	268 bp upstream
Tssr71790	transcription start site region 71790	126 bp upstream