rs47830739 SNP Detail

Summary

• ID
  rs47830739
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:11796859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAGAGAC TTGTTCCCGT
  AGGGCGTAAC TGCAGATGAG ATGCCCTGGA TCGGGCTGCG GCGAGGAATT TGGGGATTAT
  GATGCTAGTG GTTGTGGGGC CTCTCGAAGT CGTGTAGGCG GTCCAGTCAC CTTTTACTAA
  CAATTTGAAT AACTTGAGGG AATCTAGGAG AGTCCGTTTC CATAGCTATA TAAATCAGAG
  A
  CTGCTTAGCA ATTTTCTGCT TAGCCTGTAC GAGAAAAGAA GCAACTGACT TTTAACTACC
  GGGCAGAGTT GTAGGATAAA GACGTTTGTT TGATTTGGAA AACTTAAGCC CACCTCTCTC
  CTCCTTGCTG TCAAGAGCCC TGGGATTTGA AGAATTTTTA GAAAAGTGTG GTTCTTCTCA
  CTGCCCTTCC TCTTCAACGG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss146053630	ENSMUSSNP6689302	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs47830739					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11796859 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10634	CpG island 10634			99 bp distal
Cpgi10635	CpG island 10635			224 bp proximal
Gm41810	predicted gene, 41810			within coordinates
Gm59062	predicted gene, 59062			within coordinates
Rr544382	regulatory region 544382			1261 bp distal
Rr544383	regulatory region 544383			785 bp distal
Rr544384	regulatory region 544384			63 bp distal
Rr544385	regulatory region 544385			542 bp proximal
Rr544386	regulatory region 544386			938 bp proximal
Rr544387	regulatory region 544387			960 bp proximal
Stx3	syntaxin 3			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr155283	transcription start site region 155283			1391 bp downstream
Tssr155284	transcription start site region 155284			1380 bp downstream
Tssr155285	transcription start site region 155285			919 bp downstream
Tssr155286	transcription start site region 155286			453 bp downstream
Tssr155287	transcription start site region 155287			1986 bp upstream
Tssr158398	transcription start site region 158398			1053 bp upstream
Tssr158399	transcription start site region 158399			612 bp upstream
Tssr158400	transcription start site region 158400			530 bp upstream