rs47832723 SNP Detail

Summary

• ID
  rs47832723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:29582841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCTCCTG GCCCCCTGGC
  CTCTCTAACT TTGCCCCTGT TTGTCTCTCT ACCACTCTCT TCTGTCTCTG CCTCTTCCAT
  ATCTGCATTG TTCTAGCATA CACAATGACT TTTCTGGGAA CGTTTTCACA ATGAAAGTGA
  TTTGTTTTGT TTTTTGTTTT TGTTTTTTGT TTTTTTTAAG CTTTGATGGC CTAATGAGCC
  Y
  TCAGGGTATC TGCAGAAGTA ATCAGAGATG GCAGAGAAAA TGTAATCCAG GTGTTAGAAA
  ACTAGAGAGA TTGTATAAGC GCTTATTGTA TGAGAAGATA CTGGCCAGCA TTGCTGCCTC
  AGGCTGCTGG GTAGGAAGGA AATGTGAATG CTATAGCTCC GGATGAAAGA AAAAGCCCCC
  CGTGTGGGGA TTACCAGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61585710	NES17530501	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47832723					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61585710	NES17530501	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:29582841 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4517	CpG island 4517	1907 bp proximal
Gm20208	predicted gene, 20208	1732 bp upstream
Myt1l	myelin transcription factor 1-like	within coordinates
Rr464423	regulatory region 464423	1738 bp distal
Rr464424	regulatory region 464424	1633 bp distal
Rr464425	regulatory region 464425	58 bp proximal
Rr464426	regulatory region 464426	1354 bp proximal
Rr464427	regulatory region 464427	1784 bp proximal
Tssr113063	transcription start site region 113063	438 bp upstream
Tssr113064	transcription start site region 113064	450 bp upstream
Tssr113065	transcription start site region 113065	509 bp upstream
Tssr113066	transcription start site region 113066	586 bp upstream
Tssr113067	transcription start site region 113067	609 bp upstream
Tssr113068	transcription start site region 113068	635 bp upstream
Tssr113069	transcription start site region 113069	1719 bp upstream
Tssr113070	transcription start site region 113070	1874 bp upstream
Tssr116026	transcription start site region 116026	1699 bp upstream