rs47832906 SNP Detail

Summary

• ID
  rs47832906
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58892410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCACACAG CTAGATTCAG
  GTACCCTCCC CTGGCCTCAG CACCTCTTTC CTGAGAAAAG GGGGACTCAC CTGCCAGCGA
  CTTCGAGCAA GAAGGAACTT GAGCTGTTTG GTGTTGATGA AGTGGGCCTC CTCAGCAGGC
  ATGGATTTCT GCGGTGGGAG GAAAGTGGCT ATGATAACAA GAGATGGACC CTGGCGCCCT
  R
  GTCGGGGCCC TTCAAGGATG CAAGCCCAGA AGGATGGAGG CAGCAAACAT CGGGGTCTCC
  TCTCAGACAC TCCAGGGTTA GGACACTGCA AATCCTTCTC CCAGATGCCC AGGAAGGCAG
  AAGGAAGCCC TTGCTGCTAA CTGCGTAGCA ATACTTTGTC GAGGGCTTCA GAGTCCAATA
  TGAAGGCACT AGGGTCCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss132221295	ENSMUSSNP1630039	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss323695595	CHEV_11_58815086	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47832906					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58892410 () rs orientation: forward

Symbol	Name	Function Class
Gm10435	predicted gene 10435	1326 bp upstream
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Tssr101782	transcription start site region 101782	1336 bp upstream
Tssr101783	transcription start site region 101783	1373 bp upstream
Tssr101784	transcription start site region 101784	1390 bp upstream
Tssr108189	transcription start site region 108189	598 bp downstream
Tssr108190	transcription start site region 108190	614 bp downstream
Tssr108191	transcription start site region 108191	771 bp downstream
Tssr108192	transcription start site region 108192	790 bp downstream
Tssr108193	transcription start site region 108193	807 bp downstream
Tssr108194	transcription start site region 108194	837 bp downstream