rs47832938 SNP Detail

Summary

• ID
  rs47832938
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135661470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAACTAGGA CGAACAGAAC AAAGTCAGCG
  AGTCCCAAAG GGAACAGGAC TCTCTGAATG AACCCTCTGT GGAAAATGCA ATCACAGAAG
  ACAGTGGTGA GCCCTCCttg ttattttcag atatgtgaag cccttagatg tcctagactc
  R
  atggtaatcc tcctgcctct cttccccaag tgctgaggtt atacacatgt gctcctttgc
  ccaacAGCAA TGATTTGTTC ACCTAGGGCC ATATACCAGA AAGTCTGAAG AAAGATCTAG
  GTCCTTGATG GGAGCTGCAG GTGGCCAGGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145544332	ENSMUSSNP457775	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss319992797	CHEV_1_137630309	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47832938					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135661470 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Csrp1	cysteine and glycine-rich protein 1			Intron
				Noncoding-Transcript-Variant
Rr419257	regulatory region 419257			586 bp distal
Rr419258	regulatory region 419258			303 bp proximal