rs47834885 SNP Detail

Summary

• ID
  rs47834885
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135637368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATC CTTCAAACAA AAACGTGGTC
  W
  AACCTAGAAC AGCAATACCC TACTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145543499	ENSMUSSNP4778203	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss319992552	CHEV_1_137606207	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47834885					SNP	A	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135637368 () rs orientation: forward

Symbol	Name	Function Class
Gm57161	predicted gene, 57161	within coordinates
Rr419241	regulatory region 419241	946 bp distal
Rr419242	regulatory region 419242	1512 bp proximal
Tssr8966	transcription start site region 8966	1742 bp upstream