rs47836588 SNP Detail

Summary

• ID
  rs47836588
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27208515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTGGATCT GGAAGGTTAA TGGGGACCAT AGTCCTCAAG
  CTTGCTGCAC AGTGAAAGAA ACGGTATGGT GGCAGCAGTA CCCCAACAGA TGTGTGGCTT
  W
  GTTTCCATAT CAAGAACCTA GGATTTGATT ATGGGACGAG AATCTAAGCT TTGAGATTAT
  CCAGCTATCT AACTGTTGAT GCTGATTTAT CATCAAGAGC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52338319	NES15368971	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs47836588					SNP	T	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52338319	NES15368971	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27208515 () rs orientation: forward

Symbol	Name	Function Class
Silc1	sciatic injury induced lincRNA upregulator of SOX11	within coordinates
Tssr115957	transcription start site region 115957	1931 bp downstream
Tssr115958	transcription start site region 115958	1961 bp downstream
Tssr115959	transcription start site region 115959	1982 bp downstream