rs47838537 SNP Detail

Summary

• ID
  rs47838537
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:79405732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGAGTAAT TTATTTCCTG GTTTTGAACT CTTGGTGCAA
  AAGTCACTAT CATTAGACTG GGCCTTTACT GTTATGTTAG ACAATGTCTT TTTCTATGCT
  W
  TTGTGGTCTA CTGGCTGCCT TGGGCAACTA CCTGACCAAG CTCCAGTGAT CATAGCCCTG
  GTCCCCAATG GAGGCTTGTC CTGTGCCCTG ATTGATCCA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146049455	ENSMUSSNP4940703	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325475913	CHEV_17_79497643	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47838537					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:79405732 () rs orientation: forward

Symbol	Name	Function Class
Gm65520	predicted gene, 65520	within coordinates
Rr392979	regulatory region 392979	1124 bp upstream
Rr531251	regulatory region 531251	1706 bp proximal