rs47838642 SNP Detail

Summary

• ID
  rs47838642
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115095940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACACACA
  CACACACACA CACACACACA CACACACAGA CTACACAGAC CACACACGCG CGCACACACA
  TCATTGATTT GTATTAAATG TAATCATATA TTTTTAAAAC CAGAGTAACC GGGCTGGTGA
  GATGGCTCAG TAGGTAAGAG CACCCGACTA CTCTTCCAAA GGTTTGGAGT TCGGGTCCCA
  T
  CAACCACATG GTGGCTCACA ACCATCCGTA ACAAGATCTG ACTCCCTCTT CTGGATTGTC
  TGAAGACAGC TGCAGTGTAC TTACATATAA TAAATAAATG AATCTTAAAA ACAAAAACAA
  ACAAACAAAA AACCCAGAGT AACCACGGAT ATTAAGTCTA AATAAATATT CTTAAAAACC
  AGTGTTTGGG ACTGACTTTC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss137005419	ENSMUSSNP386789	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs47838642					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115095940 () rs orientation: forward

Symbol	Name	Function Class
Rr193053	regulatory region 193053	within coordinates
Stt3b	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	within coordinates