rs47839195 SNP Detail

Summary

• ID
  rs47839195
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72951156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACGGATTT CTGAGTTCAA
  GGCCAGCCTG GTCTACAGAG TGAGTTCCAG GACAGCCAGG GCTACACAGA AAAACCCTGT
  CTCGAAAAAC CAAAAAGAAA AAAAAAAAAA GAGCTAGTGC CTGAAGGAAG ATGGTTGCCT
  TGCTTTTCCT GGGGAGGGTA TTTCTCTTCA GCCCTGATGG AATGATAGAA AAGATTCTGT
  W
  CCGGTCCAGT TTATTGGGGT TGCTTACAAG CGTGGGTGAC TCCAGTAGCT GCCATCTACA
  GATTGAGAAA CTGCACTGTG GTGCAGTCCT AGTAGCTACA GACAGGAGGG GTGACTGGGT
  GTGCAGGTGG GTGGGACAGC TGGACCGCGG AGTTTGTGGT GGCAGGCCCT AGGGATGAAT
  GAAACTGCAT GGACAGAACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61420626	NES16804502	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs47839195					SNP	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61420626	NES16804502	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72951156 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22026	CpG island 22026	782 bp proximal
Pigbos1	Pigb opposite strand 1	1095 bp downstream
Rab27a	RAB27A, member RAS oncogene family	980 bp upstream
Rr197291	regulatory region 197291	1756 bp distal
Rr197292	regulatory region 197292	756 bp distal
Rr197293	regulatory region 197293	within coordinates
Rr206716	regulatory region 206716	244 bp proximal
Tssr86076	transcription start site region 86076	928 bp upstream
Tssr86077	transcription start site region 86077	959 bp upstream
Tssr86078	transcription start site region 86078	993 bp upstream
Tssr86079	transcription start site region 86079	1012 bp upstream