rs47839456 SNP Detail

Summary

• ID
  rs47839456
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72321667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GTTCCAGGGG ATCTGCCACT TCCAGCCTTC ATGGGCACCT
  GTACTCCCAC TCACAGGCCC TCCTCTGCCT CCCAATACAC ATATATAATT AAAAATACAA
  S
  AAAACTTTAA AAGAACTTTT TTTCCCATAT TCTCTCATGG AAGGCAATCC AATGATAAAT
  ACAGCAGTAC AATGTTCACT TCTCTTTTAG GTGTAGGAAG T                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144651883	ENSMUSSNP4575879	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47839456					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72321667 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	1528 bp proximal
Pecr	peroxisomal trans-2-enoyl-CoA reductase	within coordinates
Rr412794	regulatory region 412794	228 bp proximal
Rr412795	regulatory region 412795	1741 bp proximal
Rr412796	regulatory region 412796	1872 bp proximal
Tmem169	transmembrane protein 169	1887 bp upstream
Tssr114	transcription start site region 114	1764 bp downstream
Tssr115	transcription start site region 115	1780 bp downstream
Tssr116	transcription start site region 116	1797 bp downstream
Tssr7298	transcription start site region 7298	1859 bp upstream
Tssr12164	transcription start site region 12164	1716 bp downstream
Tssr12165	transcription start site region 12165	1740 bp downstream