rs47839973 SNP Detail

Summary

• ID
  rs47839973
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115080374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAA GTGAGTTATT GCTGTGACTG
  Y
  GTTTTAGAAA GAAAGTACCT TATGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss132872488	ENSMUSSNP641885	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T		C
ss323861646	CHEV_11_115050862	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs47839973					SNP	C	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115080374 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4111	CpG island 4111	1581 bp distal
Nat9	N-acetyltransferase 9 (GCN5-related, putative)	1692 bp upstream
Rr459795	regulatory region 459795	1715 bp distal
Rr459796	regulatory region 459796	1273 bp distal
Rr459797	regulatory region 459797	938 bp distal
Rr459798	regulatory region 459798	514 bp distal
Rr459799	regulatory region 459799	within coordinates
Tmem104	transmembrane protein 104	within coordinates
Tssr3728	transcription start site region 3728	1977 bp downstream
Tssr3729	transcription start site region 3729	868 bp upstream
Tssr3730	transcription start site region 3730	29 bp upstream
Tssr105849	transcription start site region 105849	1986 bp downstream
Tssr111734	transcription start site region 111734	1712 bp upstream
Tssr111735	transcription start site region 111735	1680 bp upstream
Tssr111736	transcription start site region 111736	774 bp upstream