rs47839979 SNP Detail

Summary

• ID
  rs47839979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:103215987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGG GTTTCTTCTA CAACCCAAAG
  Y
  GCATGGAGAG GAAAGGACCC AACGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62546694	NES17287123	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47839979					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62546694	NES17287123	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103215987 () rs orientation: forward

Symbol	Name	Function Class
Kctd12	potassium channel tetramerisation domain containing 12	within coordinates
Rr404259	regulatory region 404259	1058 bp upstream
Tssr126949	transcription start site region 126949	1557 bp upstream
Tssr130053	transcription start site region 130053	625 bp upstream
Tssr130054	transcription start site region 130054	580 bp upstream
Tssr130055	transcription start site region 130055	414 bp upstream
Tssr130056	transcription start site region 130056	7 bp downstream
Tssr130057	transcription start site region 130057	112 bp downstream
Tssr130058	transcription start site region 130058	1195 bp downstream
Tssr130059	transcription start site region 130059	1223 bp downstream
Tssr130060	transcription start site region 130060	1965 bp downstream