rs47840658 SNP Detail

Summary

• ID
  rs47840658
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:68719419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGACACG GTGAGCTCGT
  TTATCAGCCA GCTGCAGCCT TTGGAGCAGT TCTTCTACCT CACGATCACT GTTTGGACAG
  GTCACATTGA AGGAGTCTCC AGGTTGATGG GAAAACTCTA TTTTCTAGAG AAGGACCAAG
  GTGAAATAGA AAAGGAAAAT CCTATGCATT AGAAAAGTCT GAGGTATAGA GTAACAATAG
  M
  TGTTTCCATT ATGGCTCTCT TAGTACAGGG ACTCACAACT AATTCTAACC AAAAGAACCC
  AATGAATAAG TCCAATTTAT CAAACAAACT CTTTCATCAA TAGTTATTCC AAACAAGACC
  AATGTATGAG TGTGTGTGGG TGTGTATTTG TGTGTGGTGT ACACATACAC ATGATACACA
  CTGGGTGTGA TGGTGCACAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61831520	NES17768323	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47840658					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61831520	NES17768323	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:68719419 () rs orientation: forward

Symbol	Name	Function Class
Mtrr	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	within coordinates
Rr1653	regulatory region 1653	228 bp upstream
Rr482077	regulatory region 482077	1499 bp distal
Rr482078	regulatory region 482078	1539 bp proximal
Tg(Tek-cre)12Flv	transgene insertion 12, Richard A Flavell	within coordinates