rs47841900 SNP Detail

Summary

• ID
  rs47841900
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30905725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGGCAGC AGCTTTATCC
  TTAGCTCTAC AGTAACAATC ATCACCCAGG GGCAGACACA CCATGAACAC AGAATCATAG
  TCAGTTATAC AGCAATCGCA CCTTTAAAGA GAGTAAAGGA ACACGGGCAG CACTGGGTAT
  GGCAGCATGT TAGCAATTGT GGGCATAAGT GGAGAGGGCA CAGTGAGTCT AGTGGTTAGC
  R
  TCAGCATGGT AGATAGAAGG AAGAGGAGGA GAAAATCATA TGGACATAAA CATCCAGAAC
  AAAGATAGGC TGTCTGACAG CCTGTCTCTC GGGAGGCTGA GGCACAGGGA TGCTGCAATA
  GAGGCCAAAC TGTGTTCTTT GTGAGAAAAA GAAAGCAGAA GACAAGATTA AGGAGAAAAA
  GAGAAGAAAA GAGAGGTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60988999	NES16133992	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47841900					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60988999	NES16133992	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30905725 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18840	CpG island 18840	1895 bp proximal
Rr645057	regulatory region 645057	1673 bp proximal
Tssr65855	transcription start site region 65855	1532 bp upstream