rs47842079 SNP Detail

Summary

• ID
  rs47842079
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:20986478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAC GGCAATGTGG AAAGTGTAAG
  M
  TGAATAAACC CTTTCCTCCC AGAAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148726323	ENSMUSSNP1740163	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C		C
ss319654639	CHEV_1_20906335	CHEVERUD	SCREENING_POP	f	SNP				A		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs47842079					SNP	C	C	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:20986478 () rs orientation: forward

Symbol	Name	Function Class
Gm24171	predicted gene, 24171	714 bp upstream
Paqr8	progestin and adipoQ receptor family member VIII	within coordinates
Tssr6058	transcription start site region 6058	1586 bp upstream
Tssr6059	transcription start site region 6059	1602 bp upstream