rs47842090 SNP Detail

Summary

• ID
  rs47842090
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:8546236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAT CAAAATGACT TGCCCATGGT
  C
  TGGCAAACGA GATTTCTTAC TCAGA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132971126	ENSMUSSNP6363083	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321737018	CHEV_6_8496236	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47842090					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8546236 () rs orientation: forward

Symbol	Name	Function Class
Glcci1	glucocorticoid induced transcript 1	within coordinates
Gm45062	predicted gene 45062	within coordinates
Tssr54920	transcription start site region 54920	1649 bp downstream
Tssr54921	transcription start site region 54921	907 bp downstream