rs47843823 SNP Detail

Summary

• ID
  rs47843823
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:79627798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACAGAGGCA TGGGCTCCCG AGGATCGCGG GCTCCATGTT
  CCCGTACCCC GCAAGCAGCG GTGCTTGGCC CAGCCTGGAC CCGAAGCAGC TCGGACTACT
  Y
  CGAGGGGAGG ACTGCAGGGA CCCGCTGAGC CCGGCGCCGG GGTTCCGGCG ACTCGGCCGG
  GGAACTTTCT GGAAAGCTCC CGCAGTGGGG AGCTCCAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss139812883	ENSMUSSNP604293	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47843823					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79627798 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6774	CpG island 6774			within coordinates
Naa16	N(alpha)-acetyltransferase 16, NatA auxiliary subunit			Intron
				Noncoding-Transcript-Variant
Rr404230	regulatory region 404230			288 bp upstream
Rr496090	regulatory region 496090			within coordinates
Rr496091	regulatory region 496091			345 bp proximal
Rr496092	regulatory region 496092			410 bp proximal
Rr496093	regulatory region 496093			433 bp proximal
Tssr129900	transcription start site region 129900			937 bp upstream
Tssr129901	transcription start site region 129901			281 bp downstream
Tssr129902	transcription start site region 129902			308 bp downstream