rs47843844 SNP Detail

Summary

• ID
  rs47843844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51366153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGTGACGAG AGGGATTGGG TGCATGATGT GAAATTCTCA
  AAAAATCAAT TAAAAGTTTT TTTTGTTGTT GTTTTTTTTT TAAAGCTATT TTTAAAGATG
  Y
  GTATGGGGTA AAGGAACTAT ATGAATGTAA TTGCAGGTGC CCAAAGAGGC CAAAAGCACC
  AGCTATATAT ATATATATAT ATATTTTTTT TTTTTTTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss139475188	ENSMUSSNP5282795	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss324621293	CHEV_14_51748371	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47843844					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51366153 () rs orientation: forward

Symbol	Name	Function Class
Rnase6	ribonuclease, RNase A family, 6	within coordinates
Rr404085	regulatory region 404085	within coordinates
Rr491778	regulatory region 491778	119 bp distal
Rr491779	regulatory region 491779	77 bp proximal
Tssr125412	transcription start site region 125412	209 bp upstream
Tssr125413	transcription start site region 125413	234 bp upstream
Tssr125414	transcription start site region 125414	284 bp upstream
Tssr125415	transcription start site region 125415	311 bp upstream
Tssr125416	transcription start site region 125416	343 bp upstream
Tssr125417	transcription start site region 125417	359 bp upstream
Tssr125418	transcription start site region 125418	389 bp upstream
Tssr125419	transcription start site region 125419	422 bp upstream