rs47844639 SNP Detail

Summary

• ID
  rs47844639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163482212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAATTAC TATTAACAGT
  GGATGACTAG AGCTAGAGAG ATGGCTTAGC AGTTAAGTGC AGTTGTTTCT CTTGCAGAGG
  ACTAGAGTTC AGTTTCCGGT ACCCAACATG GTAGCTCACT ACCAGCCTTA ACTCCAGTTC
  CAGGAATCCA ACCTTCTCTT CTGACCTCTG TAGGTACTAG GCATGCAGGT GGTGTACATA
  Y
  GGAGATGTAG GCAAAACACT CTACACATAA AATAATCTAA AACATTTAAA TACAAAAAAA
  AAGAAGATGG TTCTAGTCTT ATAACATGGT CTCAGCAACC ACTTTTACAG CTTTTCCAGA
  CATATCAGAC TATTTGTATT AGAGCAAGCT GATTAACTTA GAAGTTCTCT CAGATGTAAA
  ATGAGCCTAA TGCCACTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148207569	ENSMUSSNP85077	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47844639					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163482212 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr569443	regulatory region 569443			242 bp proximal
Rr569444	regulatory region 569444			335 bp proximal
Rr569445	regulatory region 569445			1277 bp proximal
Serinc3	serine incorporator 3			Intron
				Noncoding-Transcript-Variant
Tssr27319	transcription start site region 27319			950 bp upstream